You can't flood a diesel.
Did the key shut the engine off? If it did, you messed up with the throttle position. Take it apart leaving the springs off and put the throttle midway then start engine and turn throttle down to correct idle, mark the position then put the springs back.
Did you removed the pump head and plunger for the reseal ?
The sleeve on the rotor, is that correctly engaged in the fulcrum lever?
Your residual fuel screw is what most people would consider the idle screw. It is the one that the throttle arm rests on. Idle is on the side/back of the pump.