Flip the bearings over and wipe them with a clean rag. You will likely see where they are pinching the crank. If there are not any visible marks, then as I mentioned before, you can use plastigage to over each of the journals and it will probably be obvious which one(s) is(are) too tight. Alternatively, as I mentioned before, you could pull the crank, remount the caps/bearings and use a bore gauge and mic to find the clearance on each. The bore gauge would likely tell you what was the issue.
Changing the main bearings 'because you're in there' is not usually at all beneficial and is usually, if anything, detrimental. The main bearings on these engines are usually within spec for new parts even after hundreds of thousands of miles (e.g. 200,000+ miles) unless oil changes were neglected. If they are within spec for new parts there is no benefit to changing them and you run the risk of actually causing additional wear to the crank when wearing in the new bearings.
If you still have the original bearings and have kept them in order for their locations, then I would replace them and plastigage them. If the clearance is within spec for new parts then reinstall the caps with the new bolts torqued to spec and consider it a learning experience.