Don't leave the center bolt in place. You need to remove it and install a spacer to keep pressure on the plunger in order to keep the shim at the base of the plunger from falling out of place. Tighten the center bolt down on the spacer a little, loosen the outer bolts a little, tighten the inner one a little, etc... Some people have had success without keeping pressure on the plunger due to the surface tension of the diesel fuel keeping the shim in place. Others have not been so lucky and have turned their pump into a pile of shrapnel because of not keeping pressure on the plunger.
The potential problem I see is that the cam roller shafts are less than the 1/4". If the plunger is at the bottom of the injection stroke, then when the head is removed the necessary 1/4" for o-ring access, then there is the possibility of one or both of the upper cam rollers flopping toward the head and the shaft falling toward the plunger shaft enough to cause problems while reassembling. On reasssembly, the cam roller shaft could then remain lodged between the cam plate center circle and the cam roller housing and cause the plunger to remain at the top of the injection stroke at all times. Not good.If the pump/engine is rotated so that the plunger is at the top of the injection stroke, then when the head is loosened there is not enough space for the cam roller shafts to move and cause any problems. Another possibility would be to get a bolt with threads of the same size/pitch as the timing hole plug bolt, but considerably longer. The bolt could then be placed in the timing hole and tightened down onto the plunger as the pump head bolts are loosened to keep the plunger and cam firmly pressed againt the cam rollers. Then when assembling the pump, the bolt would need to be loosened while the torx bolts were tightened. The bolt in the timing hole would be more successful and easier if done correcly, but would carry slightly more risk of damaging the plunger if tightened too much or not loosened enough while tightening the torx bolt.