Do you have a/c and does it work? A/C system problems can affect the fan operation.
good call on the a/c. they can actually cause the rad fan to quit working due to thermal load/stress. the only reason that the fan can continuously run with a/c is due to the resistor. even on low speed i dont think the fan would last long, as it was never designed for it, and thus the reason for adding the resistor.
also, an mk2 rad fan (and most others) working intermittently is a sign that it is slowly dying. dealer prices for the fan are outrageous, so junkyard ones are your best bet. if you have no intention of keeping the a/c, then get the fan from a car without a/c. you will know that you can trust that fan because theres a 99% chance that it will work, and work for a long time. i've never had an mk2 non a/c rad fan die on me, and i've had 2, and the one car i get with a/c, the motor blew. heck i even attribute it to having damaged the engine because it was overhauled, but they didn't even bother bringing the cooling system up to spec. very sloppy work IMO.
heres my rundown on what probably occurred - very hot day, a/c is on. rad fan always on, but kicking into high speed mode frequently to keep the a/c cool, or to keep the engine cool. eventually the fan will say no more, and quit functioning. the worst part is that vw never introduced a failsafe for rad fan failure. so the rad fan begins to fail. the a/c system was empty when i got it.. gee i wonder why? the thermoswitch was probably trying to turn the fan on high speed, but it wasn't responding, so the gas got too hot and pissed right out of the seals! next the engine temp was climbing, and so the a/c was cut (the only reason the compressor didn't get shot) and tried kicking the rad fan on, but no dice. this is where the beginning of the end occurs. by the time the driver realizes that the coolant gauge is way over to the red, its too late. one other thing i noticed after replacing the condensor with a new one, is that there was almost what looked to be a nest between the condensor and radiator. after cleaning that out, i noticed that the car ran cooler from the extra airflow. this could have been another reason for the frequent switching to high speed fan mode.