rotary motors are sweet, I almost got a 13B to put into my beetle based buggy, but a buddy ended up with it and put it into a triumph spitfire, crazy fast!the two stroke diesels have a intake port in the cylinder wall and exhaust valves in the head, I suppose one could retrofit a four stroke to be two stroke, lots of work, but could be fun.
honestly I think the biggest challenge of the two stroke design(damn you, now I want to build one!) would be the injection, it would need to inject into two cylinders at a time every 180* of crank rotation.maybe a injection pump from a large two cylinder industrial motor could be used and just tee the injection lines?the hardest part of the intake ports would be finding a location on the block that you could cut through and not interfere with the water jacket or oiling system, what does the back of the block look like, there are no accessories there.
there is another issue, two stroke diesels cover the intake port with the piston skirt when at TDC to keep boost out of the block, with our fairly long stroke and short piston, I'm not sure if it would.I think a chain drive would be easier than making a gear drive for the cam and the pump.