The injection pump can be moved a tooth to increase injector line clearance to the LDA device no problem, as long as there is enough room allowed in the slotted mounting adjusters. I did this on my GTD because things were very tight between the LDA and the large 2-spring injector at numer 2 cylinder and I wanted more access space to that injector. Doing this changes the range of timing adjustment that is available and also means that at TDC the injection pump locking pin will no longer be aligned with it's hole.
Although making a small change in pump orientation (like 1 tooth) shouldn't matter, I think that there may be a problem with making very drastic changes in pump orientation, because the pump seems to be built to bleeding air bubbles out through the fuel return hole. If the fuel return hole were no longer at the top, an air bubble may become trapped inside the pump, which could adversely effect pump operation.