well i rebuilt mine 15k ago now, and mines a turbo. I like Dr. Diesels method. Mine didnt work out exactly like that because while i was letting it heat up on the first start my thermostat was faulty and the engine almost overheated, was able to shut it off in time. Replaced it and tried again. Almost no smoking, warmed it up and went for a drive. Didnt push the engine for the first couple 100 kms. However, after about 400-500kms i drove the car from vancouver BC to kelowna BC, a good 600kms of highway, with car loaded and high speeds of 100-120. Then up and down Big White mountain in kelowna twice, and drove home anothe 600kms. So i didnt get to do my first oil change till about 1500kms. changed filter and oil (just regualr 15-40) and since then i've done oil change every 3,000kms. Changing filter ever time. So far havent switched to synthetic yet, but planning on it, and if i do only use Motul. Currently compression at 460psi across all cylinders. smooth running and no smoke at stock settings.
As far as i know, diesels are not like gas cars, they need a *** kicking to break in.
My teachers dodge diesel truck didnt fully start getting good milage until 100,00okms, and he also bagged on the thing hard.
Good luck.