The rabbits never had the water seperator under the car, at least I've never heard of it. Check the tightness of all the fuel line connections, metal and rubber. Don't overtorque the metal lines, you can ruin the flare. Then your up sh*t creek with no paddle. Air in the fuel line usually indicates a leak somewhere. It could be the shaft seal on the pump. Pop the t-belt cover off (upper) and see if you notice and leaks or anything. The seal I guess can leak air in and nothing out, which may be your problem. Hard to say. But, I would definitley replace the filter. Who knows whats in it or how long its been since it was replaced