I think that the PD engines are the easyest to do a timing belt to, due to the belt design and the lack of a pump on the belt.
I've never R&R'ed a cylinderhead on a PD, but many belts. There is a couple of special tools needed to do the engine/cam timing.
A tool to lock the crank and a pin to lock the cam. The crank sprocket is eliptical and does require locking and the cam only needs to be locked with a pin at TDC.
As far as the head R&R, you sould really try to get the Bentley for ref.
Depending how far you disasembled the engine now, try to leave the EGR cooler and related B.S. alone to save $ on gaskets.
I know I would def. clean out the intake manifold and EGR if needed. The timing marks for the crank can be located at the trans. bellhousing inspection hole on top. The cam timing marks will be insight on the cam sprocket through its inspection hole when all lined up.
For timing,loosen cam sprocket bolts, position pully to one side, set main tentioner, tighten down cam bolts, remove both locks,roll it overCW by hand an be sure both locks can be set to lock. No need for a computer other than to check your work.
As far as oil, I only run Total 504/507 synthetic. I've heard of destroy'ed cams w/ dyno oil.