I'll answer your easy questions first. The injectors are basically the same. The cracking pressures are slightly different but more or less interchangeable. The injector lines are different but the delivery valves are the same.
A diesel mk3 was only available with a standard transmission. I am not positive but I don't think an 11mm head was ever available on the ahu in North America.
As far as using an alh or an ahu pump for a base, I think all you can use is the internals like the camplate, head assembly, and 20mm input shaft. These pumps don't have the pivot holes for the governor lever assembly for starters. An alh pump can fit on an ahu but the hole in the pump bracket needs to be bored out to the size of the snout on the front of the pump. The ahu pump will bolt up to an alh but the end of the pump is not supported properly. I hope this answers some of your questions and not confusee you instead.