The company who rebuilt it did not install the flywheel , i did that when it was back on the stand.
Cant actually remember if the cam is lined up either with the slot in the head ??
When you installed flywheel - did you first verify that #1 piston was at TDC ? There are no reference marks or points on the harmonic balancer or pullies to determine this. It is a little difficult to do with the head installed - but can be done. And MUST be done.
On the backside of the camshaft, there is a recessed slot.
When crank/flywheel is aligned with #1 at TDC - that slot should be aligned horizontally in such a fashion that a flat bar slide will insert into the recess. If it is 180 degrees out of whack, the recess will be too low and not accept the flat bar. So it has some fool-proof in the design.
These engines are not done the same way as GAS engines.
Different school and proceedure.
I'm going to guess you don't have the specialized tools to perform the initial sprocket/belt timing or the dial indicator and jig to set the Inj Pump timing.
We can help you and direct you once it is determined exactly where you stand on these things.
Verifying #1 at TDC is Job #1.
Flywheel orientation is #2.
Cam slot alignment is #3.
I would do at least that much on the stand.
After that we can walk you through Inj Pump inital orientation and you could go ahead and install the timing belt at that time, before installing engine.
But there is no point in trying to set final Inj Pump timing with the dial indicator or the Libby-Tool, until engine is mated with the tranny.