Double check the way you have all the extra hoses hooked up. Sometimes with the maze of hoses and wires things can get mixed up. Case in point: i had someone come to me for almost the exact same problem. After looking at it all for a few minutes i saw that he had somehow looped the hoses under the hood so it didn't go anywhere.
Assuming you have it all plumbed properly, the trick i use is to back fill one hose [ or as many that are empty] with coolant and the other with water [in order to get a 50/50 mix, but adjust accordingly] .That way the system is full , and there are no air pockets. Then once started, remove the rad cap, and squeeze all the coolant hoses a few times. That helps pull and push the coolant in the hose.. Rev the motor some also. Once it starts to flow everywhere, put the rad cap back on. keep revving it until the thermostat opens and then again until the fan comes on