If I were you, I would drain the entire fuel system (Tank, injector lines, replace filter, prime with ATF), fill pump with ATF, make sure you have good clean DIESEL in the tank itself, ensure the glow plugs are operating, and crank it over at 10-15 second intervals 4-5 times to prime the system. Then cycle the plugs, and give it a go. It'll probably smoke like a pirate, and skip, miss, thrash, etc for the first few seconds/minutes of running.
After you do that, run some Lubro Moly Diesel Purge through the injection pump. Probably two or three doses will clean it out good.